Package: arete
Title: Automated REtrieval from TExt
Version: 0.1
Date: 2025-09-29
Author: Vasco V. Branco [cre, aut]
        (<https://orcid.org/0000-0001-7797-3183>), Vaughn Shirey [ctb]
        (<https://orcid.org/0000-0002-3589-9699>), Thomas Merrien [ctb]
        (<https://orcid.org/0000-0002-0339-5656>), Pedro Cardoso [aut]
        (<https://orcid.org/0000-0001-8119-9960>)
Authors@R: c(
      person("Vasco V.", "Branco", role = c("cre","aut"),  
			email = "vasco.branco@helsinki.fi", 
			comment = c(ORCID = "0000-0001-7797-3183")),
			person("Vaughn", "Shirey", role = c("ctb"),  
			email = "vms55@georgetown.edu", 
			comment = c(ORCID = "0000-0002-3589-9699")),
			person("Thomas", "Merrien", role = c("ctb"),  
			email = "thomas.merrien@helsinki.fi", 
			comment = c(ORCID = "0000-0002-0339-5656")),
			person("Pedro", "Cardoso", role = c("aut"),  
			email = "pedro.cardoso@helsinki.fi", 
			comment = c(ORCID = "0000-0001-8119-9960"))
			)
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Description: A Python based pipeline for extraction of species
        occurrence data through the usage of large language models.
        Includes validation tools designed to handle model
        hallucinations for a scientific, rigorous use of LLM. Currently
        supports usage of GPT with more planned, including local and
        non-proprietary models. For more details on the methodology
        used please consult the references listed under each function,
        such as Kent, A. et al. (1995) <doi:10.1002/asi.5090060209>,
        van Rijsbergen, C.J. (1979, ISBN:978-0408709293, Levenshtein,
        V.I. (1966)
        <https://nymity.ch/sybilhunting/pdf/Levenshtein1966a.pdf> and
        Klaus Krippendorff (2011)
        <https://repository.upenn.edu/handle/20.500.14332/2089>.
Depends: R (>= 4.3.0)
Imports: terra, cld2, stringr, reticulate, pdftools, fedmatch,
        kableExtra, dplyr, gecko, methods, ggplot2, jsonlite,
        googledrive, irr, rmarkdown
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-10-12 11:42:48 UTC; root
Config/Needs/website: rmarkdown
Suggests: knitr
VignetteBuilder: knitr
Config/pak/sysreqs: libabsl-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev libglpk-dev libgmp3-dev make libharfbuzz-dev
        default-jdk libicu-dev libjpeg-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev libpoppler-cpp-dev poppler-data
        libproj-dev python3 libsqlite3-dev libudunits2-dev
Repository: https://vascobranco.r-universe.dev
Date/Publication: 2025-11-06 17:51:06 UTC
RemoteUrl: https://github.com/vascobranco/arete
RemoteRef: HEAD
RemoteSha: cc738ca101f4ea25df71db19945a2b0c59437ce1