Package: gecko 1.0.0

gecko: Geographical Ecology and Conservation Knowledge Online

Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Future versions will integrate species threat datasets developed by the authors.

Authors:Vasco V. Branco [cre, aut], Pedro Cardoso [aut], Luís Correia [ctb]

gecko_1.0.0.tar.gz
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gecko.pdf |gecko.html✨
gecko/json (API)

# Install 'gecko' in R:

install.packages('gecko', repos = c('https://vascobranco.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vascobranco/gecko/issues

On CRAN:

conservation-science ecology spatial-analysis

25 exports 1 stars 0.84 score 135 dependencies 2 scripts 224 downloads

Last updated 10 months agofrom:e9990cbdc8. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 18 2024
R-4.5-win	NOTE	Sep 18 2024
R-4.5-linux	NOTE	Sep 18 2024
R-4.4-win	NOTE	Sep 18 2024
R-4.4-mac	NOTE	Sep 18 2024
R-4.3-win	NOTE	Sep 18 2024
R-4.3-mac	NOTE	Sep 18 2024

Exports:clean confusion.matrix create.east create.lat create.long create.north distance gecko.data gecko.getDir gecko.setDir gecko.worldclim move normalize outliers.detect outliers.visualize performance.metrics reduce spectre.area spectre.citations spectre.points spectre.template spectrify splitDataset stats thin

Dependencies:abind ape BAT biomod2 caret class cli clock cluster clusterGeneration coda codetools colorspace combinat cpp11 crayon data.table DEoptim diagram digest dismo doParallel dplyr e1071 expm fansi farver fastcluster fastmatch FNN foreach future future.apply gbm gdistance generics geometry geosphere ggplot2 globals glue gower gtable hardhat hitandrun hms hypervolume igraph ipred isoband iterators jsonlite kernlab KernSmooth ks labeling lattice lava lifecycle linprog listenv lpSolve lubridate magic magrittr maps MASS Matrix mclust mgcv mnormt ModelMetrics multicool munsell mvtnorm nlme nls2 nnet numDeriv optimParallel palmerpenguins parallelly pbapply pdist permute phangorn phytools pillar pkgconfig plyr pracma predicts PresenceAbsence prettyunits pROC prodlim progress progressr proto proxy purrr quadprog R6 raster rcdd RColorBrewer Rcpp RcppArmadillo RcppProgress recipes red reshape reshape2 rlang rpart scales scatterplot3d shape sp SQUAREM stringi stringr survival terra tibble tidyr tidyselect timechange timeDate tzdb utf8 vctrs vegan viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Uniformize raster layers.	clean
Create a confusion matrix	confusion.matrix
Create eastness layer.	create.east
Create latitude layer.	create.lat
Create longitude layer.	create.long
Create northness layer.	create.north
Create distance layer.	distance
Example data packaged with gecko	gecko.data
Read GIS directory.	gecko.getDir
Setup GIS directory.	gecko.setDir
Download worldclim files.	gecko.worldclim
Move records to closest non-NA cell.	move
Normalize raster.	normalize
Detect outliers in a set of geographical coordinates	outliers.detect
Visual detection of outliers.	outliers.visualize
Performance of model predictions	performance.metrics
Reduce dimensionality of raster layers.	reduce
Get SPECTRE raster segments.	spectre.area
Get in text citations for SPECTRE layers	spectre.citations
Get SPECTRE data from points.	spectre.points
Download the SPECTRE template.	spectre.template
Make a raster layer SPECTRE compatible	spectrify
Split a dataset for model training	splitDataset
Get a short summary of a given raster segment.	stats
Spatial thinning of occurrence records.	thin