Package: gecko 1.0.1

gecko: Geographical Ecology and Conservation Knowledge Online

Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.

Authors:Vasco V. Branco [cre, aut], Pedro Cardoso [aut], Luís Correia [ctb]

gecko_1.0.1.tar.gz
gecko_1.0.1.zip(r-4.7)gecko_1.0.1.zip(r-4.6)gecko_1.0.1.zip(r-4.5)
gecko_1.0.1.tgz(r-4.6-any)gecko_1.0.1.tgz(r-4.5-any)
gecko_1.0.1.tar.gz(r-4.7-any)gecko_1.0.1.tar.gz(r-4.6-any)
gecko_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gecko/json (API)

# Install 'gecko' in R:

install.packages('gecko', repos = c('https://vascobranco.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vascobranco/gecko/issues

On CRAN:

conservation-science ecology spatial-analysis

3.88 score 5 stars 1 packages 5 scripts 604 downloads 25 exports 141 dependencies

Last updated from:6b72f67343. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	377
source / vignettes	OK	238
linux-release-x86_64	NOTE	352
macos-release-arm64	NOTE	233
macos-oldrel-arm64	NOTE	289
windows-devel	NOTE	407
windows-release	NOTE	402
windows-oldrel	NOTE	406
wasm-release	OK	158

Exports:clean confusion.matrix create.east create.lat create.long create.north distance gecko.data gecko.getDir gecko.setDir gecko.worldclim move normalize outliers.detect outliers.visualize performance.metrics reduce spectre.area spectre.citations spectre.points spectre.template spectrify splitDataset stats thin

Dependencies:abind ape BAT biomod2 bit bit64 boot caret class cli clock cluster clusterGeneration coda codetools combinat cpp11 crayon data.table DEoptim diagram digest dismo doParallel dplyr e1071 expm farver fastcluster fastmatch FNN foreach future future.apply gbm gdistance generics geometry geosphere ggplot2 globals glue gower gtable hardhat hitandrun hms hypervolume igraph ipred isoband iterators jsonlite kernlab KernSmooth ks labeling lattice lava lifecycle linprog listenv lpSolve lubridate magic magrittr maps MASS Matrix mclust mgcv mnormt ModelMetrics multicool mvtnorm nlme nls2 nnet numDeriv optimParallel palmerpenguins parallelly pbapply pdist permute phangorn phytools pillar pkgconfig PlotTools plyr pracma predicts PresenceAbsence prettyunits pROC prodlim progress progressr proto proxy purrr quadprog R6 raster rbibutils rcdd RColorBrewer Rcpp RcppArmadillo RcppProgress Rdpack recipes red reshape reshape2 rlang rpart S7 scales scatterplot3d shape sp sparsevctrs SQUAREM stringi stringr survival terra tibble tidyr tidyselect timechange timeDate TreeTools tzdb utf8 vctrs vegan viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Uniformize raster layers.	clean
Create a confusion matrix	confusion.matrix
Create eastness layer.	create.east
Create latitude layer.	create.lat
Create longitude layer.	create.long
Create northness layer.	create.north
Create distance layer.	distance
Example data packaged with gecko	gecko.data
Read GIS directory.	gecko.getDir
Setup GIS directory.	gecko.setDir
Download worldclim files.	gecko.worldclim
Move records to closest non-NA cell.	move
Normalize raster.	normalize
Detect outliers in a set of geographical coordinates	outliers.detect
Visual detection of outliers.	outliers.visualize
Performance of model predictions	performance.metrics
Reduce dimensionality of raster layers.	reduce
Get SPECTRE raster segments.	spectre.area
Get in text citations for SPECTRE layers	spectre.citations
Get SPECTRE data from points.	spectre.points
Download the SPECTRE template.	spectre.template
Make a raster layer SPECTRE compatible	spectrify
Split a dataset for model training	splitDataset
Get a short summary of a given raster segment.	stats
Spatial thinning of occurrence records.	thin